i2b2 Installation Guide
- Overview
- Chapter 1. Introduction
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Chapter 2. Requirements
- Overview
- 2.1 Chapter Overview
- 2.2 Database Requirements
- 2.3 Browser Requirements
- 2.4 i2b2 Server Requirements
- 2.5 Web Server Requirements
- 2.6 i2b2 Requirements
- 2.7 Next Steps
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Chapter 3. Data Installation
- Overview
- 3.0 Prerequisites
- 3.10 Next Steps
- 3.11 Multiple Fact Tables
- 3.2 Data Installation Overview
- 3.3 Create Database User Accounts
- 3.4 Crcdata Tables
- 3.5 Hivedata Tables
- 3.6 IM Tables
- 3.7 Metadata Tables
- 3.8 PM Tables
- 3.9 Workdata Tables
- i2b2-on-OMOP With ENACT-OMOP Ontology v4.1
- Patient Counting Scripts ("totalnum")
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Chapter 4. Server Install Guide
- Overview
- A. Server Install on 1.7.12 and higher
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B. Legacy Approach - Build Each Cell from Source
- Overview
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Chapter 10. Data Repository (CRC) Cell Install
- Overview
- 10.1 Prerequisites
- 10.10 Next Steps
- 10.2 CRC Installation Overview
- 10.3 Stop Services
- 10.4 Configuration
- 10.5 Deployment
- 10.6 Start Services
- 10.7 Update CRC Cell Data in i2b2 Standalone Admin
- 10.8 Update Path in CRC Tables
- 10.9 Verify CRC Installation
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Chapter 11. Workplace (WORK) Cell Install
- Overview
- 11.1 Prerequisites
- 11.2 Workplace Installation Overview
- 11.3 Stop Services
- 11.4 Configuration
- 11.5 Deployment
- 11.6 Start Services
- 11.7 Update WORK Cell Data in i2b2 Standalone Admin
- 11.8 Verify Workplace Installation
- 11.9 Next Steps
- Chapter 12. File Repository (FR) Cell Install
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Chapter 13. Identity Management (IM) Cell Install
- Overview
- 13.1 Prerequisites
- 13.2 Identity Management Installation Overview
- 13.3 Stop Services
- 13.4 Configuration
- 13.5 Deployment
- 13.6 Start Services
- 13.7 Update IM Cell Data in i2b2 Standalone Admin
- 13.8 Verify IM Installation
- 13.9 Next Steps
- Chapter 4. i2b2 Server-Common Install
- Chapter 5. Project Management (PM) Cell Install
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Chapter 9. Ontology Management (ONT) Cell Install
- Overview
- 9.1 Prerequisites
- 9.2 Ontology Installation Overview
- 9.3 Stop Services
- 9.4 Configuration
- 9.5 Deployment
- 9.6 Start Services
- 9.7 Update ONT Cell Data in i2b2 Standalone Admin
- 9.8 Verify Ontology Installation
- 9.9 Next Steps
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Chapter 5. Client Installation
- Overview
- 1. i2b2 Web Client Install
- 2. i2b2 Administration Module Install
- 3. i2b2 Workbench Install (optional)
- 4. i2b2 Classic Web Client Install (optional)
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Chapter 6. Initial Setup of i2b2 in Admin
- Overview
- 6.1 Prerequisites
- 6.2 Chapter Overview
- 6.3 i2B2 NEW Admin Help Documentation May 2024
- 6.4 Authentication in i2b2
- 6.5 Optional Parameters
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6.6 Classic Webclient Admin Tool
- Overview
- 6.3 Managing i2b2 Hive Data
- 6.4 Managing i2b2 Cells
- 6.5 Managing i2b2 Users
- 6.5a i2b2 Webclient User Registration (new in 1.7.13)
- 6.6 Managing i2b2 Projects
- 6.9 Next Steps
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Chapter 7. Troubleshooting Installation Errors
- Overview
- Application Name is Missing
- CRC Cell is Unavailable
- Database Error
- Message Version is Missing
- Ontology Cell is Unavailable
- The PM Cell is down or the address in the properties file is incorrect (related to SELinux)
- ~ Methods of debugging ~
- Web Client is Not Running
- PM Service is Not Responding
- Remote Server is Unavailable
- Password Doesn’t Match or Username Doesn’t Exist
- PM Cell is Unavailable
- PM Cell’s getVersion Operation is Not Responding
- Target Location and Application Name Do Not Match
- Target Location Missing or Not Specified Correctly
- Workplace Cell is Unavailable
- Chapter 8. SAML Setup for i2b2 (v1.7.13 release)
- Chapter 9. i2b2 Virtual Machine for Demonstrations
- Chapter 10. Advanced Data Export Features
- Chapter 11. MassCPR-Major Query Status Redesign
- Licenses
- Appendices